The performance of unsupervised methods such as clustering depends on the choice of distance metric between features, or ground metric. Commonly, ground metrics are decided with heuristics or learned via supervised algorithms. However, since many interesting datasets are unlabelled, unsupervised ground metric learning approaches have been introduced. One promising option employs Wasserstein singular vectors (WSVs), which emerge when computing optimal transport distances between features and samples simultaneously. WSVs are effective, but can be prohibitively computationally expensive in some applications: $\mathcal{O}(n^2m^2(n \log(n) + m \log(m))$ for $n$ samples and $m$ features. In this work, we propose to augment the WSV method by embedding samples and features on trees, on which we compute the tree-Wasserstein distance (TWD). We demonstrate theoretically and empirically that the algorithm converges to a better approximation of the standard WSV approach than the best known alternatives, and does so with $\mathcal{O}(n^3+m^3+mn)$ complexity. In addition, we prove that the initial tree structure can be chosen flexibly, since tree geometry does not constrain the richness of the approximation up to the number of edge weights. This proof suggests a fast and recursive algorithm for computing the tree parameter basis set, which we find crucial to realising the efficiency gains at scale. Finally, we employ the tree-WSV algorithm to several single-cell RNA sequencing genomics datasets, demonstrating its scalability and utility for unsupervised cell-type clustering problems. These results poise unsupervised ground metric learning with TWD as a low-rank approximation of WSV with the potential for widespread application.

Label hierarchy is an important source of external knowledge that can enhance classification performance. However, most existing methods rely on predefined label hierarchies that may not match the data distribution. To address this issue, we propose Simultaneous label hierarchy Exploration And Learning (SEAL), a new framework that explores the label hierarchy by augmenting the observed labels with latent labels that follow a prior hierarchical structure. Our approach uses a 1-Wasserstein metric over the tree metric space as an objective function, which enables us to simultaneously learn a data-driven label hierarchy and perform (semi-)supervised learning. We evaluate our method on several datasets and show that it achieves superior results in both supervised and semi-supervised scenarios and reveals insightful label structures. Our implementation is available at https://github.com/tzq1999/SEAL.

The Wasserstein barycenter has been widely studied in various fields, including natural language processing, and computer vision. However, it requires a high computational cost to solve the Wasserstein barycenter problem because the computation of the Wasserstein distance requires a quadratic time with respect to the number of supports. By contrast, the Wasserstein distance on a tree, called the tree-Wasserstein distance, can be computed in linear time and allows for the fast comparison of a large number of distributions. In this study, we propose a barycenter under the tree-Wasserstein distance, called the fixed support tree-Wasserstein barycenter (FS-TWB) and its extension, called the fixed support tree-sliced Wasserstein barycenter (FS-TSWB). More specifically, we first show that the FS-TWB and FS-TSWB problems are convex optimization problems and can be solved by using the projected subgradient descent. Moreover, we propose a more efficient algorithm to compute the subgradient and objective function value by using the properties of tree-Wasserstein barycenter problems. Through real-world experiments, we show that, by using the proposed algorithm, the FS-TWB and FS-TSWB can be solved two orders of magnitude faster than the original Wasserstein barycenter.

To measure the similarity of documents, the Wasserstein distance is a powerful tool, but it requires a high computational cost. Recently, for fast computation of the Wasserstein distance, methods for approximating the Wasserstein distance using a tree metric have been proposed. These tree-based methods allow fast comparisons of a large number of documents; however, they are unsupervised and do not learn task-specific distances. In this work, we propose the Supervised Tree-Wasserstein (STW) distance, a fast, supervised metric learning method based on the tree metric. Specifically, we rewrite the Wasserstein distance on the tree metric by the parent-child relationships of a tree, and formulate it as a continuous optimization problem using a contrastive loss. Experimentally, we show that the STW distance can be computed fast, and improves the accuracy of document classification tasks. Furthermore, the STW distance is formulated by matrix multiplications, runs on a GPU, and is suitable for batch processing. Therefore, we show that the STW distance is extremely efficient when comparing a large number of documents.